In which I talk about points for wins, losses, and draws in rugby league, and how framing of quantitative data is important.
A science blog, by a scientist, mostly about computational biology and plant science, but a little rambly in places.
Showing posts with label visualisation. Show all posts
Showing posts with label visualisation. Show all posts
Sunday, 27 July 2014
Friday, 11 July 2014
The Baserate Fallacy, revisited
In which I share some iPython code for an interactive demo to calculate and visualise the probability that a positive test implies a positive result. You can get it here, and preview it here. Then I get entangled in a topic outwith my expertise.
Labels:
Alzheimer's Disease,
baserate fallacy,
bioinformatics,
biology,
disease,
effectors,
iPython,
plant pathology,
prevalence,
probability,
python,
science,
statistics,
visualisation
Sunday, 10 November 2013
ANI are you okay? Are you okay ANI?
In which I describe Average Nucleotide Identity (ANI), which we can use to pigeonhole bacteria into conceptual boxes labelled as 'species'. And I share more code.
Labels:
ANI,
bioinformatics,
biology,
biopython,
BLAST,
DNA,
genome,
github,
MUMmer,
phylogenetics,
phylogenomics,
science,
script,
scripting,
scripts,
sequence,
sequence analysis,
sequencing,
statistics,
visualisation
Monday, 21 January 2013
KEGGWatch, part I
In which I attempt to visualise metabolic maps for comparative genomics, and lead up to making a contribution to Biopython.
Sunday, 23 September 2012
The Colours, Man! The Colours!
In which I take a short diversion into colour theory, and share some code to automate colour selection for class data.
Labels:
bioinformatics,
biology,
colors,
colours,
data,
design,
free code,
genome,
github,
maths,
misc,
programming,
python,
science,
visualisation
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