In which I describe Average Nucleotide Identity (ANI), which we can use to pigeonhole bacteria into conceptual boxes labelled as 'species'. And I share more code.
A science blog, by a scientist, mostly about computational biology and plant science, but a little rambly in places.
Showing posts with label scripts. Show all posts
Showing posts with label scripts. Show all posts
Sunday, 10 November 2013
ANI are you okay? Are you okay ANI?
Labels:
ANI,
bioinformatics,
biology,
biopython,
BLAST,
DNA,
genome,
github,
MUMmer,
phylogenetics,
phylogenomics,
science,
script,
scripting,
scripts,
sequence,
sequence analysis,
sequencing,
statistics,
visualisation
Friday, 16 March 2012
Jambiguity
In which a blog post is brought to you by the letter 'J', but should probably have been 'X'-rated.
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