In which I describe Average Nucleotide Identity (ANI), which we can use to pigeonhole bacteria into conceptual boxes labelled as 'species'. And I share more code.
Showing posts with label github. Show all posts
Showing posts with label github. Show all posts
Sunday, 10 November 2013
Friday, 8 February 2013
Surely this has been done already...
In which it turns out that if it was done already, it was hiding somewhere. Also, I share a script that retrieves the corresponding nucleotide coding sequences from NCBI, given only a set of protein sequences.
Sunday, 23 September 2012
The Colours, Man! The Colours!
In which I take a short diversion into colour theory, and share some code to automate colour selection for class data.
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