In which I describe Average Nucleotide Identity (ANI), which we can use to pigeonhole bacteria into conceptual boxes labelled as 'species'. And I share more code.
A science blog, by a scientist, mostly about computational biology and plant science, but a little rambly in places.
Showing posts with label DNA. Show all posts
Showing posts with label DNA. Show all posts
Sunday, 10 November 2013
ANI are you okay? Are you okay ANI?
Labels:
ANI,
bioinformatics,
biology,
biopython,
BLAST,
DNA,
genome,
github,
MUMmer,
phylogenetics,
phylogenomics,
science,
script,
scripting,
scripts,
sequence,
sequence analysis,
sequencing,
statistics,
visualisation
Saturday, 7 July 2012
23 And Me And Me: Part 1
In which I cave in to curiosity, and get myself genotyped.
Labels:
23andMe,
bioinformatics,
biology,
data,
DNA,
genome,
genotyping,
GWAS,
science
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